STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C446_10605COG0306 Phosphate/sulphate permeases. (394 aa)    
Predicted Functional Partners:
C446_10600
Hypothetical protein.
       0.762
C446_10595
Glutamate/valine-rich protein.
       0.590
C446_10610
COG0633 Ferredoxin.
 
     0.543
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
    0.459
C446_02957
Stress response protein/ transporter 3 (substrates cationic amino acids); COG0531 Amino acid transporters.
  
   
 0.431
C446_10615
COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
     0.402
Your Current Organism:
Halobiforma nitratireducens
NCBI taxonomy Id: 1227454
Other names: H. nitratireducens JCM 10879, Halobiforma nitratireducens JCM 10879
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.