STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C451_06275COG0726 Predicted xylanase/chitin deacetylase. (292 aa)    
Predicted Functional Partners:
C451_06280
Hypothetical protein; COG0392 Predicted integral membrane protein.
       0.807
C451_09445
Hypothetical protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
 
 0.745
C451_07832
Hypothetical protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
 
 0.743
C451_06285
Hypothetical protein.
 
     0.732
C451_03614
Hypothetical protein.
 
     0.683
C451_06270
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
 0.632
C451_15080
COG2351 Transthyretin-like protein.
  
 
  0.509
C451_06265
COG1216 Predicted glycosyltransferases.
     
 0.409
Your Current Organism:
Halococcus thailandensis
NCBI taxonomy Id: 1227457
Other names: H. thailandensis JCM 13552, Halococcus thailandensis JCM 13552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.