Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C451_12205 | C451_12210 | C451_12205 | C451_12210 | Hypothetical protein. | Hypothetical protein. | 0.458 |
C451_12210 | C451_12205 | C451_12210 | C451_12205 | Hypothetical protein. | Hypothetical protein. | 0.458 |
C451_12210 | C451_12215 | C451_12210 | C451_12215 | Hypothetical protein. | Transposase, IS605 OrfB family protein; COG0675 Transposase and inactivated derivatives. | 0.452 |
C451_12210 | C451_15488 | C451_12210 | C451_15488 | Hypothetical protein. | Hypothetical protein. | 0.839 |
C451_12210 | flpA | C451_12210 | C451_14890 | Hypothetical protein. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.433 |
C451_12210 | prf1 | C451_12210 | C451_11793 | Hypothetical protein. | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. | 0.611 |
C451_12215 | C451_12210 | C451_12215 | C451_12210 | Transposase, IS605 OrfB family protein; COG0675 Transposase and inactivated derivatives. | Hypothetical protein. | 0.452 |
C451_15488 | C451_12210 | C451_15488 | C451_12210 | Hypothetical protein. | Hypothetical protein. | 0.839 |
C451_15488 | prf1 | C451_15488 | C451_11793 | Hypothetical protein. | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. | 0.695 |
flpA | C451_12210 | C451_14890 | C451_12210 | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | Hypothetical protein. | 0.433 |
flpA | prf1 | C451_14890 | C451_11793 | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. | 0.542 |
prf1 | C451_12210 | C451_11793 | C451_12210 | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. | Hypothetical protein. | 0.611 |
prf1 | C451_15488 | C451_11793 | C451_15488 | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. | Hypothetical protein. | 0.695 |
prf1 | flpA | C451_11793 | C451_14890 | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.542 |