STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C451_12507Class I and II aminotransferase; COG0436 Aspartate/tyrosine/aromatic aminotransferase. (379 aa)    
Predicted Functional Partners:
C451_12502
Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators.
 
     0.933
C451_10525
COG0527 Aspartokinases; Belongs to the aspartokinase family.
 
 0.888
C451_02567
Gln-dependent amino transferase; COG0367 Asparagine synthase (glutamine-hydrolyzing).
    
 0.831
C451_11350
Branched-chain alpha-keto acid dehydrogenase subunit E2; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
  
 0.828
C451_09540
Formimidoyltetrahydrofolate cyclodeaminase; COG3404 Methenyl tetrahydrofolate cyclohydrolase.
   
 
  0.754
C451_13234
Rhodanese-like protein; COG0607 Rhodanese-related sulfurtransferase.
     
 0.753
C451_12497
PAS domain S-box; COG0784 FOG: CheY-like receiver.
 
     0.708
C451_08468
COG0460 Homoserine dehydrogenase.
 
 0.694
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
 
 0.674
C451_13516
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase.
 
  0.671
Your Current Organism:
Halococcus thailandensis
NCBI taxonomy Id: 1227457
Other names: H. thailandensis JCM 13552, Halococcus thailandensis JCM 13552
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