STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C471_03848Hypothetical protein. (81 aa)    
Predicted Functional Partners:
C471_03853
Hypothetical protein; COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module.
       0.871
C471_10565
Hypothetical protein.
  
    0.765
C471_14912
Type II secretion system protein; COG2064 Flp pilus assembly protein TadC.
  
    0.747
C471_00530
PRC-barrel domain protein.
  
     0.742
C471_00210
Hypothetical protein; COG0681 Signal peptidase I.
  
     0.739
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.737
C471_08080
COG0681 Signal peptidase I.
  
     0.735
C471_10660
Replication factor A; COG1599 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins.
  
     0.735
C471_08585
Flagellin domain-containing protein; COG3430 Uncharacterized protein conserved in archaea.
  
     0.733
C471_13296
COG3389 Uncharacterized protein conserved in archaea.
  
     0.728
Your Current Organism:
Halorubrum saccharovorum
NCBI taxonomy Id: 1227484
Other names: H. saccharovorum DSM 1137, Halorubrum saccharovorum DSM 1137
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.