STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C479_02076Twin-arginine translocation protein, TatA/E family subunit; COG1826 Sec-independent protein secretion pathway components. (103 aa)    
Predicted Functional Partners:
tatC
Sec-independent periplasmic protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
  
 
 0.964
tatC-2
Sec-independent periplasmic protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
 
 
 0.952
C479_09790
Molybdopterin oxidoreductase; COG5013 Nitrate reductase alpha subunit.
   
 0.871
C479_12399
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
 
 0.803
C479_13003
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
 
 0.786
guaAB
GMP synthase subunit B; Catalyzes the synthesis of GMP from XMP.
 
    0.779
guaAA
GMP synthase subunit A; Catalyzes the synthesis of GMP from XMP.
  
    0.662
C479_11920
COG0518 GMP synthase - Glutamine amidotransferase domain.
  
    0.662
secD
Preprotein translocase subunit SecD; Involved in protein export.
  
  
 0.595
C479_05273
COG0212 5-formyltetrahydrofolate cyclo-ligase.
     
 0.591
Your Current Organism:
Halovivax asiaticus
NCBI taxonomy Id: 1227490
Other names: H. asiaticus JCM 14624, Halovivax asiaticus JCM 14624
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