STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C489_07655Deoxyuridine 5'-triphosphate nucleotidohydrolase; COG0717 Deoxycytidine deaminase. (160 aa)    
Predicted Functional Partners:
ndk
Mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
  
 
 0.932
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
  
  
  0.923
C489_00601
HAD-superfamily hydrolase, subfamily IA, variant 3; COG1011 Predicted hydrolase (HAD superfamily).
  
 
  0.907
C489_07660
Aconitate hydratase; COG1048 Aconitase A.
 
     0.591
C489_12929
Hypothetical protein.
 
     0.549
rpoL
DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.
  
    0.540
C489_07650
Hypothetical protein.
       0.539
C489_12452
NADH/Ubiquinone/plastoquinone; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.
       0.524
C489_14205
Hypothetical protein.
  
     0.499
C489_16535
Transcription factor CBF/NF-Y/histone domain-containing protein; COG2036 Histones H3 and H4.
 
     0.487
Your Current Organism:
Natrinema versiforme
NCBI taxonomy Id: 1227496
Other names: N. versiforme JCM 10478, Natrinema versiforme JCM 10478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.