STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C492_02172COG0020 Undecaprenyl pyrophosphate synthase. (201 aa)    
Predicted Functional Partners:
C492_13878
Dimethylallyltranstransferase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.865
C492_04098
Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase.
 
 
 0.839
C492_19334
Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.805
C492_03536
Peptidase M50; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
  
 0.803
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
  
 0.769
uppS
UDP diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
  
  
0.758
nusA
Transcription elongation factor NusA-like protein; Participates in transcription termination. Belongs to the NusA family.
 
    0.758
C492_20345
Isopentenyl-diphosphate delta-isomerase; COG1443 Isopentenyldiphosphate isomerase.
 
  
 0.747
C492_12140
COG1562 Phytoene/squalene synthetase.
     
 0.718
C492_19539
Squalene/phytoene synthase; COG1562 Phytoene/squalene synthetase.
     
 0.718
Your Current Organism:
Natronococcus jeotgali
NCBI taxonomy Id: 1227498
Other names: N. jeotgali DSM 18795, Natronococcus jeotgali DSM 18795
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