STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C493_01360Efflux protein, mate family; COG0534 Na+-driven multidrug efflux pump. (488 aa)    
Predicted Functional Partners:
C493_04276
Squalene/phytoene synthase; COG1562 Phytoene/squalene synthetase.
   
 
 0.589
C493_16449
COG1562 Phytoene/squalene synthetase.
   
 
 0.589
tbp
Transcription factor; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
  
 0.587
C493_04336
Glyceraldehyde-3-phosphate dehydrogenase, type I; COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.579
gap
COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase.
   
  
 0.579
C493_10373
COG1131 ABC-type multidrug transport system, ATPase component.
  
  
 0.575
C493_11007
COG1131 ABC-type multidrug transport system, ATPase component.
  
  
 0.575
C493_15178
COG1131 ABC-type multidrug transport system, ATPase component.
  
  
 0.575
C493_19893
ABC transporter-related protein; COG1131 ABC-type multidrug transport system, ATPase component.
  
  
 0.575
rnp2
Ribonuclease P-related protein; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
     
 0.457
Your Current Organism:
Natronolimnobius innermongolicus
NCBI taxonomy Id: 1227499
Other names: N. innermongolicus JCM 12255, Natronolimnobius innermongolicus JCM 12255
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.