STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C494_13466COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (270 aa)    
Predicted Functional Partners:
C494_17783
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
 
 0.910
C494_13411
3-oxoacyl-ACP reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  
 
0.907
C494_13066
NADH-ubiquinone oxidoreductase chain 49kDa; COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 
 0.753
C494_13461
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
    0.591
C494_13471
COG3467 Predicted flavin-nucleotide-binding protein.
  
    0.519
C494_10375
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
   
 
 0.517
C494_10645
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
   
 
 0.517
C494_10650
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
   
 
 0.517
C494_15718
N-acetylgalactosamine-4-sulfatase; COG2194 Predicted membrane-associated, metal-dependent hydrolase.
   
 
 0.517
mre11
Metallophosphoesterase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity; Belongs to the MRE11/RAD32 family.
  
 
 0.430
Your Current Organism:
Natronorubrum bangense
NCBI taxonomy Id: 1227500
Other names: N. bangense JCM 10635, Natronorubrum bangense JCM 10635
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