STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C494_18498ATPase P; COG2217 Cation transport ATPase. (822 aa)    
Predicted Functional Partners:
C494_18493
Hypothetical protein.
 
   
 0.833
C494_02486
COG1522 Transcriptional regulators.
     
 0.752
C494_09475
ATPase P; COG2217 Cation transport ATPase.
 
   
0.654
C494_19827
Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase.
 
   
0.654
C494_18128
Heavy metal transport/detoxification protein; COG2217 Cation transport ATPase.
     
 0.591
C494_18503
Hypothetical protein; COG0628 Predicted permease.
  
    0.554
C494_18488
COG3425 3-hydroxy-3-methylglutaryl CoA synthase.
  
  
 0.507
C494_11650
Hypothetical protein.
 
   
 0.459
C494_04765
Cation diffusion facilitator family transporter; COG0053 Predicted Co/Zn/Cd cation transporters.
 
 
 0.439
C494_14233
COG0370 Fe2+ transport system protein B.
  
 
 0.401
Your Current Organism:
Natronorubrum bangense
NCBI taxonomy Id: 1227500
Other names: N. bangense JCM 10635, Natronorubrum bangense JCM 10635
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