Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI44091.1 | SEJ35425.1 | SAMN05444007_101194 | SAMN05444007_104245 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.425 |
SEI44091.1 | aroB | SAMN05444007_101194 | SAMN05444007_101195 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.401 |
SEI44091.1 | aroK | SAMN05444007_101194 | SAMN05444007_101196 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.401 |
SEJ35425.1 | SEI44091.1 | SAMN05444007_104245 | SAMN05444007_101194 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.425 |
aroB | SEI44091.1 | SAMN05444007_101195 | SAMN05444007_101194 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.401 |
aroB | aroK | SAMN05444007_101195 | SAMN05444007_101196 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.999 |
aroK | SEI44091.1 | SAMN05444007_101196 | SAMN05444007_101194 | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.401 |
aroK | aroB | SAMN05444007_101196 | SAMN05444007_101195 | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.999 |