STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ58443.1Uncharacterized conserved protein YjiS, DUF1127 family. (76 aa)    
Predicted Functional Partners:
SEJ58411.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.634
SEJ06795.1
Hypothetical protein.
  
     0.486
SEJ55144.1
Protein of unknown function.
  
     0.483
SEI51911.1
Flp pilus assembly protein TadG.
  
     0.462
SEJ58478.1
Hypothetical protein; Belongs to the BI1 family.
       0.462
SEJ90766.1
Hypothetical protein.
  
     0.458
SEJ65410.1
Hypothetical protein.
  
     0.447
Your Current Organism:
Cribrihabitans marinus
NCBI taxonomy Id: 1227549
Other names: C. marinus, CGMCC 1.13219, Cribrihabitans marinus Chen et al. 2014, DSM 29340, JCM 19401, Phaeobacter sp. CZ-AM5, strain CZ-AM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.