STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ66494.1Outer membrane protein OmpA. (209 aa)    
Predicted Functional Partners:
SEJ66516.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
    0.928
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 0.840
SEJ66555.1
Pilus assembly protein CpaB.
 
     0.812
SEJ66258.1
Prepilin peptidase CpaA.
 
     0.801
SEJ66294.1
Tetratricopeptide repeat-containing protein.
 
     0.777
SEJ66333.1
Tetratricopeptide repeat-containing protein.
 
     0.759
SEK03215.1
Type VI secretion system protein ImpK.
  
 0.748
SEJ66471.1
Pilus assembly protein CpaE.
 
     0.726
SEJ66401.1
Type II secretion system protein F (GspF).
 
     0.720
tolQ
Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.709
Your Current Organism:
Cribrihabitans marinus
NCBI taxonomy Id: 1227549
Other names: C. marinus, CGMCC 1.13219, Cribrihabitans marinus Chen et al. 2014, DSM 29340, JCM 19401, Phaeobacter sp. CZ-AM5, strain CZ-AM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.