STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ81349.14a-hydroxytetrahydrobiopterin dehydratase. (97 aa)    
Predicted Functional Partners:
SEJ54233.1
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.876
SEJ81323.1
Hypothetical protein.
  
    0.851
SEJ81270.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
  
    0.803
SEJ94354.1
Homogentisate 1,2-dioxygenase.
 
  
 0.749
SEJ81293.1
Glycerophosphoryl diester phosphodiesterase.
   
   0.720
SEJ81128.1
Aromatic amino acid aminotransferase apoenzyme.
  
  
 0.648
SEJ94338.1
Fumarylacetoacetate hydrolase.
 
  
 0.634
SEJ38957.1
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
      0.556
SEI69971.1
methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase.
  
  
 0.529
SEJ34054.1
Protein of unknown function DUF58.
   
    0.526
Your Current Organism:
Cribrihabitans marinus
NCBI taxonomy Id: 1227549
Other names: C. marinus, CGMCC 1.13219, Cribrihabitans marinus Chen et al. 2014, DSM 29340, JCM 19401, Phaeobacter sp. CZ-AM5, strain CZ-AM5
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