STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ94369.1Transcriptional regulator, MarR family. (145 aa)    
Predicted Functional Partners:
SEJ94354.1
Homogentisate 1,2-dioxygenase.
 
     0.842
SEJ94309.1
Glyoxylase, beta-lactamase superfamily II.
 
     0.726
SEJ94282.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
 
    0.696
SEJ94230.1
Maleylacetoacetate isomerase.
 
     0.678
SEJ94268.1
Protein of unknown function.
 
     0.670
SEJ54233.1
4-hydroxyphenylpyruvate dioxygenase.
 
    0.584
SEJ94385.1
Adenylate/guanylate cyclase.
       0.572
SEJ94338.1
Fumarylacetoacetate hydrolase.
 
     0.537
SEI95858.1
Sulfur dehydrogenase subunit SoxD.
   
 
  0.534
SEJ94323.1
Predicted dioxygenase of extradiol dioxygenase family.
       0.410
Your Current Organism:
Cribrihabitans marinus
NCBI taxonomy Id: 1227549
Other names: C. marinus, CGMCC 1.13219, Cribrihabitans marinus Chen et al. 2014, DSM 29340, JCM 19401, Phaeobacter sp. CZ-AM5, strain CZ-AM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.