STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ97271.14-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family. (810 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 0.997
SEI51709.1
Sarcosine oxidase subunit delta.
 
 0.990
SEI51670.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
0.989
SEI97641.1
Sarcosine oxidase subunit delta.
 
 0.989
SEI97685.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
0.989
SEI51632.1
Sarcosine oxidase subunit gamma.
  
 0.982
SEI97737.1
Sarcosine oxidase subunit gamma.
  
 0.982
SEJ97163.1
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
 
0.979
SEI39880.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
0.975
SEI39981.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
0.975
Your Current Organism:
Cribrihabitans marinus
NCBI taxonomy Id: 1227549
Other names: C. marinus, CGMCC 1.13219, Cribrihabitans marinus Chen et al. 2014, DSM 29340, JCM 19401, Phaeobacter sp. CZ-AM5, strain CZ-AM5
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