STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK07389.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (350 aa)    
Predicted Functional Partners:
SEK07383.1
TRAP transporter, DctM subunit.
 
 
  0.975
SEK07396.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 
     0.904
SEK07415.1
Transcriptional regulator, TetR family.
 
     0.869
SEK07411.1
Carbon-monoxide dehydrogenase medium subunit.
 
     0.858
SEK07405.1
Carbon-monoxide dehydrogenase small subunit.
 
     0.707
SEJ52050.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.408
Your Current Organism:
Cribrihabitans marinus
NCBI taxonomy Id: 1227549
Other names: C. marinus, CGMCC 1.13219, Cribrihabitans marinus Chen et al. 2014, DSM 29340, JCM 19401, Phaeobacter sp. CZ-AM5, strain CZ-AM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.