STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFT88010.1Ribulose-bisphosphate carboxylase small chain; Identified by sequence similarity; putative. (142 aa)    
Predicted Functional Partners:
cbbL
Ribulose-bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 0.998
AFT88009.1
CbbX protein; Identified by sequence similarity; putative.
 
  
 0.970
AFT88007.1
Phosphoribulokinase; Identified by sequence similarity; putative.
 
 
 0.958
AFT88034.1
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.922
AFT87231.1
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.922
AFT86704.1
Phosphoglycolate phosphatase; Identified by sequence similarity; putative.
    
 0.911
fbp
Identified by sequence similarity; putative; Belongs to the FBPase class 1 family.
 
  
 0.848
AFT88033.1
HAD-superfamily hydrolase; Identified by sequence similarity; putative.
 
   
 0.788
AFT86423.1
Transferase hexapeptide repeat containing protein; Identified by sequence similarity; putative.
   
 
 0.690
AFT87987.1
LysR family transcriptional regulator; Identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
 
   
 0.664
Your Current Organism:
Paraburkholderia phenoliruptrix
NCBI taxonomy Id: 1229205
Other names: Burkholderia phenoliruptrix BR3459a, P. phenoliruptrix BR3459a, Paraburkholderia phenoliruptrix BR3459a
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