STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DI53_1101Helix-turn-helix domain-containing protein. (294 aa)    
Predicted Functional Partners:
DI53_1103
Hypothetical protein.
 
     0.723
DI53_1102
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.683
DI53_2511
Transcriptional regulator, AraC family.
  
     0.673
DI53_1456
Transcriptional regulator, AraC family.
  
     0.581
DI53_2671
Osmosensitive K+ channel response regulator.
  
 
 0.559
DI53_2556
Transcriptional regulator, AraC family.
  
   0.543
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.471
DI53_3858
Multi-sensor hybrid histidine kinase.
     
 0.463
DI53_0893
ATPase domain-containing protein.
     
 0.452
DI53_3828
Transcriptional regulator, AraC family.
  
     0.445
Your Current Organism:
Sphingobacterium deserti
NCBI taxonomy Id: 1229276
Other names: ACCC 05744, KCTC 32092, S. deserti, Sphingobacterium sp. ACCC 05744, Sphingobacterium sp. ZW, strain ZW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.