STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000497835_00909Hypothetical protein. (179 aa)    
Predicted Functional Partners:
cmoB_1
tRNA U34 carboxymethyltransferase.
   
 0.832
ubiG_1
Ubiquinone biosynthesis O-methyltransferase.
   
 0.832
tpm
Thiopurine S-methyltransferase.
   
 0.832
cmoM
tRNA 5-carboxymethoxyuridine methyltransferase.
   
 0.832
ubiG_2
Ubiquinone biosynthesis O-methyltransferase.
   
 0.832
GCA_000497835_05257
Hypothetical protein.
   
  0.832
coq7
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase.
    
 0.826
GCA_000497835_02106
Hypothetical protein.
    
 0.808
GCA_000497835_03510
Hypothetical protein.
   
 
  0.802
nuoF
NADH-quinone oxidoreductase subunit F.
   
 
 0.792
Your Current Organism:
gamma proteobacterium L18
NCBI taxonomy Id: 1229486
Other names: g. proteobacterium L18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.