STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_14691CLP1_P domain-containing protein. (746 aa)    
Predicted Functional Partners:
PFICI_12082
Uncharacterized protein.
   
 0.999
PFICI_14076
WD_REPEATS_REGION domain-containing protein.
   
 0.973
PFICI_08999
ULP_PROTEASE domain-containing protein.
   
 0.962
PFICI_10544
Pre-rRNA-processing protein IPI1.
   
 0.915
PFICI_14248
Uncharacterized protein.
   
 0.880
PFICI_00724
Uncharacterized protein.
   
 0.880
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.783
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.739
PFICI_05867
60S ribosomal protein L7.
   
 
 0.667
PFICI_01475
CP-type G domain-containing protein.
   
 
 0.667
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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