STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_15021CID domain-containing protein. (670 aa)    
Predicted Functional Partners:
CLP1
mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.
    
 0.999
PFICI_03838
Suf domain-containing protein.
    
 0.998
PFICI_00334
YTH domain-containing protein.
   
 0.998
PFICI_03166
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.996
PFICI_06955
Protein cft-1.
    
 0.993
PFICI_01180
DUF3453 domain-containing protein.
    
 0.993
PFICI_00893
RRM domain-containing protein.
    
 0.992
PFICI_09419
Endoribonuclease YSH1.
    
 0.991
PFICI_13687
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 
 0.981
PFICI_14586
Fip1 domain-containing protein.
    
 0.952
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.