STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_14143Protein transport protein sec-13; Belongs to the WD repeat SEC13 family. (405 aa)    
Predicted Functional Partners:
PFICI_08893
Protein transport protein SEC31.
    
 0.999
PFICI_10138
Peptidase S59 domain-containing protein.
    
 0.999
PFICI_06448
Uncharacterized protein.
    
 0.999
PFICI_06868
RanBD1 domain-containing protein.
    
 0.999
PFICI_04517
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
    
0.999
PFICI_01949
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.999
PFICI_13579
WD_REPEATS_REGION domain-containing protein.
    
 0.998
PFICI_08267
Zinc_ribbon_16 domain-containing protein.
    
 0.998
PFICI_03018
WD_REPEATS_REGION domain-containing protein.
    
 0.998
PFICI_03551
Protein transport protein sec-24.
   
 0.998
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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