STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_13546Uncharacterized protein. (908 aa)    
Predicted Functional Partners:
PFICI_06868
RanBD1 domain-containing protein.
   
 0.889
PFICI_01454
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.625
PFICI_13748
WD_REPEATS_REGION domain-containing protein.
    
 0.623
PFICI_12701
U-box domain-containing protein.
    
 0.605
PFICI_05231
Pre-mRNA-splicing factor SYF1.
    
 0.601
PFICI_01949
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.560
PFICI_04825
Uncharacterized protein.
   
 0.557
PFICI_01534
Pre-mRNA-splicing factor clf1.
   
 0.537
PFICI_07475
Cell cycle control protein cwf14.
    
 0.530
PFICI_08619
Uncharacterized protein.
   
 
 0.525
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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