STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_12839Pre-rRNA-processing protein ESF2. (315 aa)    
Predicted Functional Partners:
PFICI_10929
Uncharacterized protein.
   
 
 0.991
PFICI_04796
RNA helicase.
   
 
 0.987
PFICI_05556
ATP-dependent RNA helicase DBP8; Belongs to the DEAD box helicase family.
   
 
 0.985
PFICI_06012
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 
 0.984
PFICI_04836
NUC153 domain-containing protein.
   
 
 0.984
PFICI_04503
Uncharacterized protein.
   
 
 0.982
PFICI_04502
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.977
PFICI_02728
Uncharacterized protein.
   
 
 0.974
PFICI_00422
Uncharacterized protein.
   
 
 0.974
PFICI_00830
WD_REPEATS_REGION domain-containing protein.
   
 
 0.974
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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