STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_11611Glutamate--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (629 aa)    
Predicted Functional Partners:
PFICI_05064
tRNA-binding domain-containing protein.
 
 0.999
PFICI_07235
Methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.990
PFICI_05082
Proline--tRNA ligase.
 
 0.989
PFICI_09025
Isoleucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.988
PFICI_09211
Leucine--tRNA ligase.
 
 0.980
PFICI_12912
Glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.965
PFICI_13030
60S ribosomal protein L30.
   
 0.958
PFICI_11911
60S ribosomal protein L25-A.
  
 0.958
PFICI_05273
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.955
PFICI_08216
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.954
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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