PFICI_12096 protein (Pestalotiopsis fici) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFICI_12096

Uncharacterized protein. (83 aa)

Predicted Functional Partners:

PFICI_12095

0.879

PFICI_09622

0.701

PFICI_06296

0.690

PFICI_09413

0.664

PFICI_13304

0.584

PFICI_08251

0.582

PFICI_11420

0.581

PFICI_12097

0.555

PFICI_08252

0.537

PFICI_04153

0.537

Your Current Organism:

Pestalotiopsis fici

NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFICI_04153	PFICI_08252	W3XJ88	W3X3M5	GTP cyclohydrolase 1.	GTP_cyclohydroI domain-containing protein.	0.907
PFICI_04153	PFICI_09622	W3XJ88	W3X192	GTP cyclohydrolase 1.	Nucleoside diphosphate kinase.	0.838
PFICI_04153	PFICI_12095	W3XJ88	W3WS87	GTP cyclohydrolase 1.	Uncharacterized protein.	0.903
PFICI_04153	PFICI_12096	W3XJ88	W3WSB1	GTP cyclohydrolase 1.	Uncharacterized protein.	0.537
PFICI_06296	PFICI_08251	W3X5L5	W3X5T0	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	FAD-binding PCMH-type domain-containing protein.	0.653
PFICI_06296	PFICI_09622	W3X5L5	W3X192	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Nucleoside diphosphate kinase.	0.991
PFICI_06296	PFICI_11420	W3X5L5	W3WXD5	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.688
PFICI_06296	PFICI_12095	W3X5L5	W3WS87	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Uncharacterized protein.	0.691
PFICI_06296	PFICI_12096	W3X5L5	W3WSB1	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Uncharacterized protein.	0.690
PFICI_06296	PFICI_13304	W3X5L5	W3WLN7	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Adenine phosphoribosyltransferase.	0.653
PFICI_08251	PFICI_06296	W3X5T0	W3X5L5	FAD-binding PCMH-type domain-containing protein.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.653
PFICI_08251	PFICI_09622	W3X5T0	W3X192	FAD-binding PCMH-type domain-containing protein.	Nucleoside diphosphate kinase.	0.523
PFICI_08251	PFICI_12095	W3X5T0	W3WS87	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein.	0.582
PFICI_08251	PFICI_12096	W3X5T0	W3WSB1	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein.	0.582
PFICI_08252	PFICI_04153	W3X3M5	W3XJ88	GTP_cyclohydroI domain-containing protein.	GTP cyclohydrolase 1.	0.907
PFICI_08252	PFICI_09622	W3X3M5	W3X192	GTP_cyclohydroI domain-containing protein.	Nucleoside diphosphate kinase.	0.838
PFICI_08252	PFICI_12095	W3X3M5	W3WS87	GTP_cyclohydroI domain-containing protein.	Uncharacterized protein.	0.903
PFICI_08252	PFICI_12096	W3X3M5	W3WSB1	GTP_cyclohydroI domain-containing protein.	Uncharacterized protein.	0.537
PFICI_09413	PFICI_12095	W3X0D4	W3WS87	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Uncharacterized protein.	0.664
PFICI_09413	PFICI_12096	W3X0D4	W3WSB1	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Uncharacterized protein.	0.664