STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_09870CFEM domain-containing protein. (185 aa)    
Predicted Functional Partners:
PFICI_12947
Phenylalanine--tRNA ligase beta subunit.
  
 0.987
PFICI_12114
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 0.633
PFICI_06845
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 0.609
PFICI_07864
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.600
PFICI_01804
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
  
 0.596
PFICI_12912
Glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.592
PFICI_01847
Tyrosine--tRNA ligase.
  
  
 0.588
PFICI_09025
Isoleucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.578
PFICI_13716
Tyrosine--tRNA ligase.
  
  
 0.569
PFICI_00883
Histidine--tRNA ligase.
  
  
 0.558
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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