STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_09063Uncharacterized protein. (776 aa)    
Predicted Functional Partners:
PFICI_04614
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 
 0.815
PFICI_13793
Uncharacterized protein.
    
 0.683
PFICI_04795
SUN domain-containing protein.
    
 
 0.621
PFICI_08478
Protein BTN.
    
 
 0.580
PFICI_01448
Protein kinase domain-containing protein.
   
 0.557
PFICI_07702
TP6A_N domain-containing protein.
    
 
 0.428
PFICI_08991
Ras-related protein Rab-11A.
    
 0.408
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.