STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_08950Uncharacterized protein. (545 aa)    
Predicted Functional Partners:
PFICI_10711
Histone acetyltransferase type B subunit 2.
    
 0.992
PFICI_12990
Uncharacterized protein.
     
 0.980
PFICI_13548
Hist_deacetyl domain-containing protein.
    
 0.917
PFICI_01799
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.917
PFICI_08532
MRG domain-containing protein.
   
 0.810
PFICI_08535
Tudor-knot domain-containing protein.
   
 0.810
PFICI_08988
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
    
 0.804
PFICI_04735
Hist_deacetyl domain-containing protein.
    
 0.804
PFICI_13662
HDAC_interact domain-containing protein.
    
 0.754
PFICI_13236
Uncharacterized protein.
    
 0.754
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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