STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_07838Vacuolar protein 8. (563 aa)    
Predicted Functional Partners:
PFICI_11907
Lipase atg15.
    
 
 0.949
PFICI_14296
Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.
    
 
 0.935
PFICI_11083
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
 
 0.762
PFICI_00743
ATG11 domain-containing protein.
    
 
 0.664
PFICI_11797
Serine/threonine-protein kinase ATG1.
    
 
 0.620
PFICI_10177
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.611
PFICI_07969
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
  
 0.594
PFICI_03126
Uncharacterized protein.
      
 0.587
PFICI_09732
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
 
 0.543
PFICI_13287
Sorting nexin-4.
      
 0.535
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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