STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_06287Epimerase domain-containing protein. (332 aa)    
Predicted Functional Partners:
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.650
PFICI_12961
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.647
PFICI_08113
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.645
PFICI_08803
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.644
PFICI_01804
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 0.644
PFICI_07863
40S ribosomal protein S29.
   
 0.640
PFICI_08732
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 0.638
PFICI_05588
40S ribosomal protein S19.
   
 0.630
PFICI_03228
40S ribosomal protein S20.
   
 0.628
PFICI_05318
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
   
 0.596
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.