STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_06338Uncharacterized protein. (186 aa)    
Predicted Functional Partners:
PFICI_08821
Uncharacterized protein.
   
 
 0.643
PFICI_09994
Uncharacterized protein.
   
 
 0.617
PFICI_06430
FtsJ domain-containing protein.
   
 
 0.565
PFICI_12945
RRM domain-containing protein.
   
 
 0.498
PFICI_12961
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.460
PFICI_10139
T-complex protein 1 subunit epsilon.
   
 
 0.436
PFICI_03957
60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.429
PFICI_12103
Uracil phosphoribosyltransferase.
 
   
 0.420
PFICI_09064
26S proteasome regulatory subunit rpn-8.
 
 
   0.410
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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