PFICI_04211 protein (Pestalotiopsis fici) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFICI_04211

Uncharacterized protein. (373 aa)

Predicted Functional Partners:

PFICI_00830

0.999

PFICI_09821

0.998

PFICI_08647

0.998

PFICI_01317

0.998

PFICI_09956

0.997

PFICI_08902

0.997

PFICI_08056

0.997

PFICI_04502

0.997

PFICI_02728

0.997

PFICI_10260

0.996

Your Current Organism:

Pestalotiopsis fici

NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFICI_00830	PFICI_01317	W3XNA3	W3XNC2	WD_REPEATS_REGION domain-containing protein.	CBF domain-containing protein.	0.997
PFICI_00830	PFICI_02728	W3XNA3	W3XF29	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
PFICI_00830	PFICI_04211	W3XNA3	W3X8H3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
PFICI_00830	PFICI_04502	W3XNA3	W3XBS1	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
PFICI_00830	PFICI_08056	W3XNA3	W3X532	WD_REPEATS_REGION domain-containing protein.	Periodic tryptophan protein 2.	0.999
PFICI_00830	PFICI_08647	W3XNA3	W3WYE6	WD_REPEATS_REGION domain-containing protein.	Utp12 domain-containing protein.	0.999
PFICI_00830	PFICI_08902	W3XNA3	W3WZ41	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
PFICI_00830	PFICI_09821	W3XNA3	W3WVB8	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.990
PFICI_00830	PFICI_09956	W3XNA3	W3WVQ1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
PFICI_00830	PFICI_10260	W3XNA3	W3WWE0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
PFICI_01317	PFICI_00830	W3XNC2	W3XNA3	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
PFICI_01317	PFICI_02728	W3XNC2	W3XF29	CBF domain-containing protein.	Uncharacterized protein.	0.993
PFICI_01317	PFICI_04211	W3XNC2	W3X8H3	CBF domain-containing protein.	Uncharacterized protein.	0.998
PFICI_01317	PFICI_04502	W3XNC2	W3XBS1	CBF domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
PFICI_01317	PFICI_08056	W3XNC2	W3X532	CBF domain-containing protein.	Periodic tryptophan protein 2.	0.998
PFICI_01317	PFICI_08647	W3XNC2	W3WYE6	CBF domain-containing protein.	Utp12 domain-containing protein.	0.997
PFICI_01317	PFICI_08902	W3XNC2	W3WZ41	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
PFICI_01317	PFICI_09821	W3XNC2	W3WVB8	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
PFICI_01317	PFICI_09956	W3XNC2	W3WVQ1	CBF domain-containing protein.	Uncharacterized protein.	0.991
PFICI_01317	PFICI_10260	W3XNC2	W3WWE0	CBF domain-containing protein.	Uncharacterized protein.	0.994