STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_00100Urea carboxylase. (1250 aa)    
Predicted Functional Partners:
PFICI_12937
CoA carboxyltransferase C-terminal domain-containing protein.
 
 0.973
PFICI_01095
Uncharacterized protein.
  
 0.964
PFICI_00808
Uncharacterized protein.
 
  
0.960
PFICI_14819
Arginase; Belongs to the arginase family.
    
 0.937
PFICI_14215
Uncharacterized protein; Belongs to the arginase family.
    
 0.937
PFICI_10592
Methylcrotonoyl-CoA carboxylase beta chain.
 
 0.924
PFICI_12219
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.918
PFICI_11097
Uncharacterized protein.
 
 0.918
PFICI_02746
Uncharacterized protein.
  
 0.911
PFICI_06242
Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
   
 
 0.905
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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