STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_00989Uncharacterized protein. (418 aa)    
Predicted Functional Partners:
PFICI_09941
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.909
PFICI_06233
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
   
 0.904
PFICI_01414
ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family.
   
 0.896
PFICI_12945
RRM domain-containing protein.
   
 0.816
PFICI_07748
Uncharacterized protein.
   
 0.815
PFICI_08021
Nuclear cap-binding protein subunit 2.
    
 0.795
PFICI_12899
Elongation factor 3.
   
 
 0.755
PFICI_11845
W2 domain-containing protein.
   
 0.725
PFICI_05223
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.694
TIF32
Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
 0.693
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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