STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FOC1_g10002699Uncharacterized protein. (307 aa)    
Predicted Functional Partners:
FOC1_g10013734
Histone acetyltransferase type B subunit 2.
    
 
 0.605
FOC1_g10013608
Helicase ARIP4.
   
   0.570
FOC1_g10005114
Sister chromatid cohesion protein.
   
    0.570
FOC1_g10008739
Histone-lysine N-methyltransferase, H3 lysine-36 specific; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.
   
    0.545
FOC1_g10012616
ISWI chromatin-remodeling complex ATPase ISW2.
    
 
 0.525
FOC1_g10002070
Uncharacterized protein.
    
 
 0.525
FOC1_g10012463
Lymphoid-specific helicase.
    
 
 0.525
FOC1_g10011031
Transcription factor BYE1.
   
    0.485
Your Current Organism:
Fusarium oxysporum f. sp. cubense race 1
NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.