STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FOC1_g10013930rRNA-processing protein efg-1. (303 aa)    
Predicted Functional Partners:
FOC1_g10014333
Nucleolar protein 16.
   
    0.873
FOC1_g10013727
60S ribosomal subunit assembly/export protein loc-1.
   
    0.817
FOC1_g10002047
ATP-dependent RNA helicase DBP9.
   
   0.774
FOC1_g10008168
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
    0.768
FOC1_g10015916
rRNA-processing protein utp23.
   
    0.759
FOC1_g10007236
RRM domain-containing protein.
   
    0.750
FOC1_g10016142
ATP-dependent RNA helicase ROK1.
   
    0.717
FOC1_g10015956
Nucleolar protein 12.
   
    0.683
FOC1_g10009744
Nucleolar protein 58.
   
   0.682
FOC1_g10012028
NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial; Belongs to the complex I 30 kDa subunit family.
   
   0.681
Your Current Organism:
Fusarium oxysporum f. sp. cubense race 1
NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1
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