STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FOC4_g10014712Elongin-C. (83 aa)    
Predicted Functional Partners:
FOC4_g10009174
E3 ubiquitin-protein ligase RBX1.
   
 0.984
FOC4_g10015302
Uncharacterized protein.
    
 0.982
FOC4_g10012498
DNA repair protein rhp7.
    
 0.954
FOC4_g10015303
NEDD8.
   
 0.945
FOC4_g10009124
COP9 signalosome complex subunit 1.
    
  0.930
FOC4_g10009236
COP9 signalosome complex subunit 5.
   
 0.928
FOC4_g10009235
Uncharacterized protein.
   
 0.888
FOC4_g10014792
Cullin-3; Belongs to the cullin family.
   
 0.871
FOC4_g10015114
COP9 signalosome complex subunit 4.
   
  0.869
FOC4_g10013666
COP9 signalosome complex subunit 3.
    
  0.866
Your Current Organism:
Fusarium oxysporum f. sp. cubense race 4
NCBI taxonomy Id: 1229665
Other names: F. oxysporum f. sp. cubense race 4
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.