STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FOC4_g10013637L-2,4-diaminobutyrate decarboxylase. (500 aa)    
Predicted Functional Partners:
FOC4_g10005392
Tryptophan synthase.
    
 0.763
FOC4_g10004479
Tryptophan synthase.
    
 0.763
FOC4_g10014644
Histidine biosynthesis trifunctional protein.
    
 0.755
FOC4_g10001613
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.755
FOC4_g10006835
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
   
 
  0.683
FOC4_g10003483
Nitrate reductase [NADH] 1.
   
 
  0.683
FOC4_g10008121
Pantothenate synthetase.
  
 
 0.674
FOC4_g10000891
Glutaminase.
  
 
 0.655
FOC4_g10004482
Aspartate aminotransferase.
   
 
 0.615
FOC4_g10015410
Carbamoyl-phosphate synthase arginine-specific large chain.
    
 0.612
Your Current Organism:
Fusarium oxysporum f. sp. cubense race 4
NCBI taxonomy Id: 1229665
Other names: F. oxysporum f. sp. cubense race 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.