STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX21827.1Regulatory protein SoxS. (136 aa)    
Predicted Functional Partners:
APX21825.1
Thioredoxin-related protein; PFAM: Thioredoxin-like domain.
 
     0.930
APX21829.1
Hypothetical protein; PFAM: Sulphur transport.
 
     0.902
APX21823.1
PFAM: Sulfur oxidation protein SoxY; TIGRFAM: thiosulfate oxidation carrier protein SoxY.
 
   
 0.874
APX21822.1
Sulfur compound chelating protein SoxZ; PFAM: Sulphur oxidation protein SoxZ; TIGRFAM: thiosulfate oxidation carrier complex protein SoxZ.
 
   
 0.863
APX21824.1
Sulfur-oxidizing protein SoxX; PFAM: Cytochrome c; TIGRFAM: sulfur oxidation c-type cytochrome SoxX.
 
     0.845
APX21828.1
'PFAM: Bacterial regulatory protein, arsR family'.
 
     0.843
APX21821.1
Diheme cytochrome SoxA (sulfur oxidation); TIGRFAM: sulfur oxidation c-type cytochrome SoxA.
 
     0.836
APX21820.1
Sulfate thiol esterase SoxB; 'PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase'; TIGRFAM: thiosulfohydrolase SoxB; Belongs to the 5'-nucleotidase family.
 
   
 0.827
APX21818.1
Sulfur dehydrogenase subunit SoxD; 'PFAM: Cytochrome c; Cytochrome C oxidase, cbb3-type, subunit III'.
 
     0.820
APX21819.1
Sulfur dehydrogenase subunit SoxC; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain; TIGRFAM: sulfite dehydrogenase.
 
     0.814
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.