STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX21839.1PFAM: Sulfotransferase family. (214 aa)    
Predicted Functional Partners:
APX24623.1
PFAM: Glycosyl transferase family 2.
 
     0.754
APX22830.1
Hypothetical protein.
  
     0.751
APX22831.1
Hypothetical protein.
  
     0.736
APX21490.1
PFAM: Endonuclease/Exonuclease/phosphatase family.
 
     0.687
APX24627.1
PFAM: Glycosyl transferase family 2.
 
   
 0.637
APX24625.1
PFAM: Glycosyl transferase family 2.
 
   
 0.628
APX21747.1
Hypothetical protein.
  
     0.600
APX22844.1
Putative N-acetylglucosaminyltransferase; PFAM: Core-2/I-Branching enzyme.
 
  
 0.565
APX21840.1
fatty-acyl-CoA synthase; PFAM: AMP-binding enzyme; AMP-binding enzyme C-terminal domain.
       0.545
APX23794.1
PFAM: Polyketide cyclase / dehydrase and lipid transport.
  
     0.536
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.