STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX21879.1PFAM: Binding-protein-dependent transport system inner membrane component. (396 aa)    
Predicted Functional Partners:
APX21880.1
PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.996
APX24668.1
PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.973
APX22883.1
Putrescine transport system substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
 0.952
APX24237.1
PFAM: Binding-protein-dependent transport system inner membrane component.
  
0.951
APX24750.1
PFAM: Binding-protein-dependent transport system inner membrane component.
  
0.950
APX21554.1
PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.947
APX21881.1
Putative spermidine/putrescine transport system substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein.
 
  
 0.932
APX24452.1
PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.913
potA
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 0.902
APX22881.1
PFAM: Binding-protein-dependent transport system inner membrane component.
  
0.763
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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