STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX21969.1Putative ATPase with chaperone activity, associated with Flp pilus assembly. (440 aa)    
Predicted Functional Partners:
APX21872.1
'PFAM: Type II secretion system (T2SS), protein F'.
 
    0.906
APX21871.1
Tight adherence protein B; 'PFAM: Type II secretion system (T2SS), protein F'.
 
    0.900
APX21869.1
Pilus assembly protein CpaE; PFAM: AAA domain.
 
    0.878
APX21865.1
PFAM: Flp pilus assembly protein RcpC/CpaB; TIGRFAM: Flp pilus assembly protein CpaB.
 
    0.862
APX21874.1
Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat.
 
     0.857
APX21875.1
Prepilin peptidase CpaA; PFAM: Type IV leader peptidase family.
 
     0.829
APX21866.1
Pilus assembly protein CpaC; PFAM: BON domain; Bacterial type II and III secretion system protein; Pilus formation protein N terminal region; Belongs to the bacterial secretin family.
 
     0.802
APX21873.1
TPR repeat-containing protein; PFAM: TPR repeat.
 
     0.788
APX23977.1
Serine/threonine-protein kinase RsbW; PFAM: Histidine kinase-like ATPase domain.
  
  
 0.764
APX21870.1
Pilus assembly protein CpaF; PFAM: Type II/IV secretion system protein.
 
     0.760
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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