STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX22009.1'PFAM: Bacterial regulatory proteins, tetR family'. (192 aa)    
Predicted Functional Partners:
APX22010.1
PFAM: HlyD membrane-fusion protein of T1SS; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.789
APX22011.1
Multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.
 
   
 0.653
APX22008.1
PFAM: putative DUF4386 protein.
 
     0.584
APX22610.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.495
APX21581.1
Hypothetical protein.
  
     0.483
APX21505.1
Hypothetical protein.
 
  
 0.466
APX23583.1
AAA domain-containing protein; PFAM: AAA domain.
  
     0.465
APX25254.1
V8-like Glu-specific endopeptidase; PFAM: Trypsin-like peptidase domain.
  
    0.439
APX21836.1
PFAM: putative DUF2252 protein.
  
     0.425
APX22576.1
'PFAM: Cytochrome c; Cytochrome C oxidase, cbb3-type, subunit III'.
  
     0.422
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.