STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
APX22442.1Putative glycosyl transferase involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase. (253 aa)    
Predicted Functional Partners:
APX22789.1
ATPase involved in chromosome partitioning; PFAM: AAA domain.
 
  
 0.822
APX22785.1
Hypothetical protein; PFAM: Glycosyltransferase like family 2.
  
 0.775
APX22858.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: CoA-binding domain; Polysaccharide biosynthesis protein.
  
 0.717
APX22783.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.655
APX22793.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
 0.614
APX24643.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
  
 0.584
APX21594.1
Putative PLP-dependent enzyme involved in cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.570
APX22788.1
Uncharacterized protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein.
 
  
 0.567
APX22792.1
PFAM: Glycosyltransferase like family 2.
 
  
 0.554
APX22801.1
PFAM: O-antigen ligase like membrane protein.
 
  
 0.548
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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