STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX22560.1'PFAM: Lactonase, 7-bladed beta-propeller'; TIGRFAM: 40-residue YVTN family beta-propeller repeat. (305 aa)    
Predicted Functional Partners:
APX22561.1
PFAM: Sulfur oxidation protein SoxY; Sulphur oxidation protein SoxZ; TIGRFAM: quinoprotein dehydrogenase-associated SoxYZ-like carrier.
 
     0.945
APX22559.1
PFAM: Polyketide cyclase / dehydrase and lipid transport.
 
     0.936
APX22557.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Periplasmic binding protein; 'TIGRFAM: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system'.
 
  
 0.897
APX22565.1
'PFAM: Cytochrome C oxidase, cbb3-type, subunit III'; 'TIGRFAM: c-type cytochrome, methanol metabolism-related'.
 
 
 0.844
APX22558.1
PFAM: putative DUF2380 protein.
 
     0.841
APX22555.1
NitT/TauT family transport system substrate-binding protein; PFAM: NMT1/THI5 like.
 
    0.839
APX22566.1
PFAM: PQQ enzyme repeat; PQQ-like domain; 'TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family'.
 
    0.785
APX22564.1
Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'; TIGRFAM: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein.
 
   
 0.778
APX22591.1
PFAM: Sulfur oxidation protein SoxY; Sulphur oxidation protein SoxZ; TIGRFAM: quinoprotein dehydrogenase-associated SoxYZ-like carrier.
 
     0.768
APX22553.1
Putative copper-binding protein.
 
    0.759
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.