STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX22745.1PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family. (106 aa)    
Predicted Functional Partners:
APX23358.1
Thioredoxin reductase (NADPH); PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase.
 
 0.993
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
  
 0.858
APX25221.1
Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
   
 
 0.746
APX22746.1
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD-like helicase C-terminal domain; PD-(D/E)XK nuclease superfamily; UvrD/REP helicase N-terminal domain; 'TIGRFAM: double-strand break repair helicase AddA, alphaproteobacterial type'; Belongs to the helicase family. UvrD subfamily.
  
    0.742
APX22747.1
PFAM: PD-(D/E)XK nuclease superfamily; 'TIGRFAM: double-strand break repair protein AddB, alphaproteobacterial type'.
  
    0.739
APX22748.1
PFAM: MobA-like NTP transferase domain.
     
 0.734
APX22749.1
Hypothetical protein; PFAM: Phosphotransferase enzyme family.
       0.734
APX22750.1
PFAM: Threonylcarbamoyl adenosine biosynthesis protein TsaE; TIGRFAM: tRNA threonylcarbamoyl adenosine modification protein YjeE.
       0.734
APX22751.1
PAS domain-containing protein; PFAM: PAS domain; PAS fold.
  
  
 0.703
hslV
HslV component of HslUV peptidase; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
  
 0.679
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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