STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX22801.1PFAM: O-antigen ligase like membrane protein. (469 aa)    
Predicted Functional Partners:
APX22800.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.954
APX22784.1
'PFAM: Acyl transferase domain; Polyketide synthase dehydratase; Ketoacyl-synthetase C-terminal extension; Beta-ketoacyl synthase, C-terminal domain; Phosphopantetheine attachment site; Thioesterase domain; KR domain; Beta-ketoacyl synthase, N-terminal domain'.
 
    0.874
APX22783.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.871
APX22785.1
Hypothetical protein; PFAM: Glycosyltransferase like family 2.
 
  
 0.859
APX22792.1
PFAM: Glycosyltransferase like family 2.
 
  
 0.841
APX22791.1
Putative dehydrogenase; 'PFAM: NAD dependent epimerase/dehydratase family; Oxidoreductase family, NAD-binding Rossmann fold'.
 
   
 0.830
APX22788.1
Uncharacterized protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein.
 
  
 0.828
APX22796.1
PFAM: Glycosyl transferase WecB/TagA/CpsF family; 'TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family'; Belongs to the glycosyltransferase 26 family.
 
   
 0.825
APX22780.1
Hypothetical protein.
 
   
 0.824
APX22786.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein; 'PFAM: Phosphopantetheine attachment site; Luciferase-like monooxygenase; AMP-binding enzyme; Formyl transferase; Formyl transferase, C-terminal domain; AMP-binding enzyme C-terminal domain'; TIGRFAM: natural product biosynthesis luciferase-like monooxygenase domain.
 
     0.823
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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